Publications
2007 2006 2005 2004 2003 2002 2001 2000 1996-1999 1991-1995 1980-1990Commentaries and Book Chapters
2005-2007 2002-2004 2000-2001 1998-1999Publications
2007
Lee M, Hook B, Pan G, Kershner AM, Meerritt C, Seydoux G, Thomson JA, Wickens M, Kimble J "Conserved Regulation of MAP Kinase Expression by PUF RNA-Binding Proteins." (PLOS Genetics, in press). [PLOS article] [PubMed]
Yu J, Vodyanik M, Smuga-Otto K, Frane J, Antosiewicz-Bourget J, Frane J, Tian S, Nie J, Jonsdottir GA, Ruotti V, Stewart R, Slukvin II, Thomson JA."Induced Pluripotent Stem Cell Lines Derived from Human Somatic Cells." Science 318 (2007):1917-1920. [PubMed]
Pommer M, Zhang Y, Keerthi N, Chen D, Thomson JA, Meinhart CD & HT Soh."Dielectrophoretic Separation of Platelets from Diluted Whole Blood in Microfluidic Channels." Electrophoresis. 2007 (in press, accepted 9/07).
Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Stewart R, Thomson JA. "Whole genome analysis of Histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells." Cell Stem Cell. 2007 Sep;1(3):299-312. [Stem Cell Stem Abstract]
Chen D, Wang P, Lewis RL, Daigh CA, Ho C, Chen X, Thomson JA, Kendziorski CM A Microarray Analysis of the Emergence of Embryonic Definitive Hematopoiesis." Exp Hem. 35 (2007) 1344-1357. [PubMed]
Pan G and JA Thomson "Nanog and transcriptional networks in embryonic stem cell pluripotency." Cell Res. 2007:17:42-49. [PubMed]
Rajesh R, Chinnasamy N, Mitalipov S, Wolf D, Slukvin I, Thomson J, Shaaban A. "Differential Requirements for Hematopoietic Commitment Between Human and Rhesus Embryonic Stem Cells." Stem Cells. 2007;25;490-499. [PubMed]
Derda R, Li L, Orner B, Lewis RL, Thomson JA, Kiessling LL. "Defined Substrates for Human Embryonic Stem Cell Growth Identified from Surface Arrays." ACS Chem Biol. 2007 May 22;2(5):347-55. [PubMed]
Hirst N, Delaney A, Rogers S, Schnerch A, Persaud D, O’Connor M, Zeng T, Moksa M, Menzies S, Baross A, Khattra J, Siddiqui A, Holt R, Jones S, Thomson JA, Eaves C, Marra M. "LongSAGE Profiling of Nine Human Embryonic Stem Cell Lines." Genome Biol. 2007 Jun 14;8(6):R113. [PubMed]
2006
Vodyanik MA, Thomson JA, Slukvin II. "Leukosialin (CD43) defines hematopoietic progenitors in human embryonic stem cell differentiation cultures." Blood. 2006 Sep 15:108(6):2095-2105. [PubMed]
Kameda T, Smuga-Otto K, Thomson JA. "A severe de novo methylation of episomal vectors by human ES cells." Biochem and Biophys Res Comm. 2006 Nov 3:349(4):1269-1277. [PubMed]
Slukvin, II, Vodyanik MA, Thomson JA, Gumenyuk M, Choi K. "Directed Differentiation of Human Embryonic Stem Cells into Functional Dendritic Cells through the Myeloid Pathway." J Immunol. 2006 Mar 1;176(5):2924-32. [PubMed]
Narayan AD, Chase JL, Lewis RL, Kaufman DS, Thomson JA, Zanjani ED "Human Embryonic Stem Cell-Derived Hematopoietic Cells are Capable of Engrafting Primary as Well as Secondary Fetal Sheep Recipients." Blood. 2006 Mar 1;107(5):2180-3. [PubMed]
Levenstein ME, Ludwig TE, Xu R, Llanas RA, VanDenHeuvel-Kramer K, Manning D, Thomson JA. "Basic FGF Support of Human Embryonic Stem Cell Self-Renewal." Stem Cells. 2006 Mar;24(3):568-574. [PubMed]
Yu J, Vodyanik MA, He P, Slukvin II, Thomson JA. "Human Embryonic Stem Cells Reprogram Myeloid Precursors Following Cell-Cell Fusion." Stem Cells. 2006 Jan;24(1):168-76. [PubMed]
Ludwig TE, Bergendahl V, Levenstein ME, Yu J, Probasco MD, Thomson JA. "Feeder-Independent Culture of Human Embryonic Stem Cells." Nat Methods. 2006 Aug;3(8):637-646. [PubMed]
Ludwig TE, Levenstein ME, Jones J, Berggren W, Mitchen E, Frane J, Crandall L, Daigh CA, Conard K, Piekarczyk M, Llanas R, Thomson JA. "Derivation of Human Embryonic Stem Cells in Defined Conditions." Nat Biotechnol. 2006 Feb;24(2):185-7. [PubMed]
2005
Yu J, Vodyanik MA, He P, Slukvin II, Thomson JA. "Human Embryonic Stem Cells Reprogram Myeloid Precursors Following Cell-Cell Fusion." Stem Cells. 2005 Oct 6. [PubMed]
Kameda T, Thomson JA. "The human ERas gene has an upstream premature polyadenylation signal that results in a truncated, non-coding transcript." Stem Cells. 2005 Aug 4. [PubMed]
Yan Y, Yang D, Zarnowska ED, Du Z, Werbel B, Valliere C, Pearce RA, Thomson JA, Zhang SC. "Directed differentiation of dopaminergic neuronal subtypes from human embryonic stem cells." Stem Cells. 2005 Jun-Jul;23(6):781-90. [PubMed]
Xu RH, Peck RM, Li DS, Feng X, Ludwig T, Thomson JA. "Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells." Nat Methods. 2005 Mar;2(3):185-90. [PubMed]
Zwaka TP, Thomson JA. "Differentiation of human embryonic stem cells occurs through symmetric cell division." Stem Cells. 2005 Feb;23(2):146-9. [PubMed]
Vodyanik MA, Bork JA, Thomson JA, Slukvin II."Human embryonic stem cell-derived CD34+ cells: efficient production in the coculture with OP9 stromal cells and analysis of lymphohematopoietic potential." Blood. 2005 Jan 15;105(2):617-26. [PubMed]
Zwaka TP, Thomson JA. "A germ cell origin of embryonic stem cells?" Development. 2005 Jan;132(2):227-33. [PubMed]
2004
Orner BP, Derda R, Lewis RL, Thomson JA, Kiessling LL. "Arrays for the combinatorial exploration of cell adhesion." J Am Chem Soc. 2004 Sep 8;126(35):10808-9. [PubMed]
Gerami-Naini, B, O.V. Dovzhenko, M. Durning, R. Xu, J.A. Thomson, and T.G. Golos. "Trophoblast differentiation in embryoid bodies derived from human embryonic stem cells" Endocrinology, 145 (2004) 1517-1524. [PubMed]
Kaufman, D.S., R.L. Lewis, E.T. Hanson, R. Auerbach, and J. A. Thomson. “Functional endothelial cells derived from rhesus monkey embryonic stem cells.” Blood, 103 (2004) 1325-1332. [PubMed]
Draper, J.S., K. Smith, P. Gokhale, H. D. Moore, E. Maltby, J. Johnson, L. Meisner, T. P. Zwaka, J. A. Thomson and P.W.Andrews. “Karyotypic evolution of human Embryonic Stem (ES) cells in culture: recurrent gain of chromosomes 17 (17q) and 12”. Nature Biotech, 22 (2004): 53-54. [PubMed]
2003
Sperger, J.M, X. Chen, J.S. Draper, J.E. Antosiewicz, C. Chon, S. Jones, J.D. Brooks, P.W. Andrews, P.O. Brown, and J.A. Thomson. “Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors.” Proc. Natl. Acad. Sci. U.S.A., 100 (2003): 13350-13355. [PubMed]
Marshall, V.S., M.A. Browne, L. Knowles, T.G. Golos, and J.A. Thomson. “Ovarian stimulation of marmoset monkeys (Callithrix jacchus) using recombinant human follicle stimulating hormone.” J. Med. Primatol. 32 (2003): 57-66. [PubMed]
He, J., Y. Ma, Y, Lee, J.A. Thomson, and T.J. Kamp. “Human embryonic stem cells develop into multiple types of cardiac myocytes: action potential characterization.” Circulation Research 93 (2003): 32-39. [PubMed]
Ma, Y., A. Ramezani, R. Lewis, R.G. Hawley, and J.A. Thomson. “High level sustained transgene expression in human embryonic stem cells using lentiviral vectors.” Stem Cells 21 (2003): 111-117. [PubMed]
Zwaka, T.P and J.A. Thomson. “Homologous recombination in human embryonic stem cells.” Nature Biotech, 21 (2003): 319-21. [PubMed]
2002
Xu, R., X. Chen, D.S. Li, R. Li, G.C. Addicks, C. Glennon, T.P. Zwaka, and J.A. Thomson. “BMP4 initiates human embryonic stem cell differentiation to trophoblast.” Nature Biotech. 20 (2002): 1261-1264. [PubMed]
Henderson J., J.S. Draper, H.S. Baillie, S. Fishel, J.A. Thomson, H. Moore, and P.W. Andrews. “Pre-implantation human embryos and embryonic stem cells show comparable expression of stage specific embryonic antigens. “ Stem Cells 20 (2002): 329-337. [PubMed]
Kaufman, D.S. and J.A. Thomson. “Human ES Cells: Hematopoiesis and transplantation strategies.” J. Anat. 200 (2002): 243-248. [PubMed]
Draper, J. S., C.P. Pigott, J.A. Thomson, and P.W. Andrews. “Surface antigens of human embryonic stem cells: Changes upon differentiation in culture.” J. Anat. 200 (2002): 249-258. [PubMed]
Cooper, S., W. Bennett, J. Andrade, B.E. Reubinof, J.A. Thomson, and M.F. Pera. “Biochemical properties of a keratan sulphate/chondroitin sulphate proteoglycan expressed in primate pluripotent stem cells.” J. Anat. 200 (2002): 259-265. [PubMed]
Wolfgang, M.J., V.S. Marshall, S.G. Eisele, M.L. Schotzko, J.A. Thomson, and T.G. Golos. “An efficient method for expressing transgenes in nonhuman primate embryos using a stable episome.” Mol. Reprod. Dev. 62 (2002): 69-73. [PubMed]
2001
Zhang, S-C., M. Wernig, I.D. Duncan, O. Brustle, and J.A. Thomson. "In vitro differentiation and transplantation of human ES cell-derived neural precursors." Nature Biotech. 19 (2001): 1129-1133. [PubMed]
Wolfgang, M.J., S.G. Eisele, M.A. Browne, M.L. Schotzko, M.A. Garthwaite, M. Durning, A. Ramezani, R.G. Hawley, J.A. Thomson, and T.G. Golos. “Lentiviral gene transfer into primate preimplantation embryos elicits a maternal anti-placental immune response.” Proc. Natl. Acad. Sci. U.S.A. 98 (2001): 10728-10732. [PubMed]
Allen, T.M., B.R. Mothé, J. Sidney, P. Jing, J.L. Dzuris, T.U. Vogel, M.E. Leibl, D.H. O’Conner, X. Wang, M.C. Wussow, J.A. Thomson, J.D. Altman, D.I. Watkins, and A. Sette. “CD8(+) lymphocytes from simian immunodeficiency virus-infected rhesus macaques recognize 14 different epitopes bound by the major histocompatibility complex class I molecule mamu-A*01: Implications for vaccine design and testing.” J. Virol. 75 (2001): 738-749. [PubMed]
Jacobson, L., B. Kahan, A. Djamali, J.A. Thomson, and J.S. Odorico. “Differentiation of endoderm derivatives, pancreas and intestine, from rhesus embryonic stem cells.” Trans. Proc. 33 (2001): 674. [PubMed]
Li, F., L. Lu, L. Vida, J.A. Thomson, and G.R. Honig. “Bone morphogenetic protein-4 (BMP-4) induces efficient hematopoietic differentiation of rhesus monkey embryonic stem (ES) cells in vitro.” Blood 98b (2001): 335-342. [PubMed]
Odorico, J.S., D.S. Kaufman, and J.A. Thomson. “Multilineage differentiation from human embryonic stem cell lines.” Stem Cells 19 (2001): 193-204. [PubMed]
Marshall, V.S., M. Waknitz, and J.A. Thomson. “Isolation and maintenance of primate embryonic stem cells.” Methods Mol. Biol. 158 (2001): 1-8. [PubMed]
Kaufman, D.S., E.T. Hanson, R.L. Lewis, R. Auerbach, and J.A. Thomson. “Hematopoietic colony forming cells derived from human embryonic stem cells.” Proc. Natl. Acad. Sci. U.S.A. 98 (2001): 10716-10721. [PubMed]
2000
Amit, M., M. Carpenter, M. Inokuma, C. Chiu, C.P. Harris, M.A. Waknitz, J. Itskovitz-Eldor, and J.A. Thomson. “Clonally derived human embryonic stem cell lines maintain pluripotency and proliferative potential for prolonged periods of in vitro culture.” Dev. Biol. 227, 2 (2000): 271-278. [PubMed]
Kaufman, D.S., J. Odorico, and J.A. Thomson. “Transplantation therapies from human embryonic stem cells-circumventing immune rejection.” Regen. Med. 1 (2000): 1-5.
Jones, J.M. and J.A. Thomson. “Human embryonic stem cell technology.” Semin. Reprod. Med. 18, 2 (2000): 219-223. [PubMed]
Ramer, J.C., R.L. Garber, K.E. Steele, J.F. Boyson, C. O'Rourke, and J.A. Thomson.. “Fatal lymphoproliferative disease associated with a novel gammaherpesvirus in a captive population of common marmosets.” Lab. Anim. Sci. 50, 1 (2000): 59-68. [PubMed]
Thomson, J.A. and J.S. Odorico. “Human Embryonic Stem Cell and Germ Cell Lines.” Trends Biotech. 18 (2000): 59-63. [PubMed]
1996 - 1999
Thomson, J.A., J. Itskovitz-Eldor, S.S. Shapiro, M.A. Waknitz, J.J. Swiergiel, V.S. Marshall, and J.M. Jones. “Embryonic stem cell lines derived from human blastocysts.” Science 282 (1998): 1145-1147. [PubMed]
Thomson, J.A. and V.S. Marshall. “Primate Embryonic Stem Cells.” Curr. Top. in Dev. Biol. 38 (1998): 133-160. [PubMed]
Steger, K.K., M. Dykhuizen, J. Mitchen, P.W. Hinds, B.L. Preuninger, M. Wallace, J. Thomson, Y. Lu, and C.D. Pauza. “CD4+ T cell and CD20+ B cell changes that predict rapid disease progression after SHIV89.6PD inoculation of rhesus macaques.” J. Virol. 72 (1998): 1600-1605. [PubMed]
Dykhuizen, M., J. Mitchen, D.C. Montefiori, J.A. Thomson, H. Lardy, and C.D. Pauza. “Determinants of disease in the SIV-infected rhesus macaque: Characterizing animals with low antibody responses and rapid progression.” J. Gen. Virol. 79 (1998): 2461-2467. [PubMed]
Thomson, J.A., V.S. Marshall, and J.Q. Trojanowski. “Neural differentiation of rhesus embryonic stem cells.” AMPHIS 106 (1998): 149-157. [PubMed]
Uno, H., P. Alsum, M.L. Zimbric, W.D. Houser, J.A. Thomson, and J.W. Kemnitz. “Colon cancer in aged captive rhesus monkeys (Macaca mulatta).” J. Med. Primatol. 44 (1998): 19-27. [PubMed]
First, N.L. and J.A. Thomson. “From cows stem therapies?” Nature Biotech. 18: 620-621. 1998. [PubMed]
Thomson, J.A., V.S Marshall, and J.Q. Trojanowski. “Neural differentiation of rhesus embryonic germ cells,” in Neoplastic Transformation of Testicular Germ Cells, edited by E. Rajpert-De Meyts, K.M Grigor, and N.E Skakkebaek., 149-157. Copenhagen: Munksgaard, 1998.
Marshall, V.S., J. Kalishman, and J.A. Thomson. “Nonsurgical embryo transfer in the common marmoset monkey.” J. Med. Primatol. 26 (1997): 241-247. [PubMed]
Kalishman, J, J. Scheffler, J.R. Paul-Murphy, and J.A. Thomson. “The prevalence of cryptosporidia and giardia in a captive population of common marmosets.” Lab. Anim. Sci. 46 (1996): 116-119.
Thomson, J.A. and J. Scheffler. “Hemorrhagic typhlocolitis in common marmosets associated with attaching and effacing Escherichia coli.” Lab. Anim. Sci. 46 (1996): 275-279. [PubMed]
Thomson, J.A., J. Kalishman, T.G. Golos, M. Durning, C.P. Harris, R.A. Becker, and J.P. Hearn. “Pluripotent cell lines derived from common marmoset (Callithrix jacchus) blastocysts.” Biol. Reprod. 55 (1996): 254-259. [PubMed]
1991 - 1995
Thomson, J.A., R. Becker, M. Durning, T.G. Golos, C. Harris, J. Kalishman, and J.P. Hearn. “Isolation of a primate embryonic stem cell line.” Proc. Natl. Acad. Sci. U.S.A. 92 (1995): 7844-7848. [PubMed]
Thomson, J.A., J. Kalishman, and J.P. Hearn. “Non-surgical uterine stage preimplantation embryo collection from the common marmoset.” J. Med. Primatol. 23 (1994): 333-336. [PubMed]
Steinberg, H. and J.A. Thomson. “Bilateral renal carcinoma in a cat.” Vet. Pathol. 31 (1994): 704-705. [PubMed]
Steinberg, H., R.R. Dubielzig, J.A. Thomson, and G. Dzata. “Primary gastrointestinal lymphosarcoma with epitheliotropism in three Shar-pei and one Boxer dog.” Vet. Pathol. 30 (1993): 473. [PubMed]
Thomson, J.A., S.A. Iliff-Sizemore, P.M. Gliessman, and D.P. Wolf. “Collection and fertilization potential of sperm from the Sulawesi crested black macaque (Macaca nigra).” Am. J. Primatol. 28 (1992): 289-297.
Thomson, J.A., D.L. Hess, K.D. Dahl, S.A. Iliff-Sizemore, R.L. Stouffer, and D.P. Wolf. “The Sulawesi crested black macaque (Macaca nigra) menstrual cycle: Changes in perineal tumescence and serum estradiol, progesterone, FSH, and LH levels.” Biol. Reprod. 46 (1992): 879-884. [PubMed]
1980 - 1990
Wolf, D.P., J.A. Thomson, M.B. Zelinski-Wooten, and R.L. Stouffer. “In vitro fertilization-embryo transfer in nonhuman primates: The technique and its applications.” Mol. Reprod. Dev. 27 (1990): 261-280. [PubMed]
Thomson, J. and D. Solter. “Chimeras between parthenogenetic or androgenetic blastomeres and normal embryos: allocation to inner cell mass or trophectoderm.” Dev. Biol. 131 (1989): 580-583. [PubMed]
Thomson, J. and D. Solter. “The developmental fate of androgenetic, parthenogenetic and gynogenetic cells in chimeric gastrulating mouse embryos.” Genes Dev. 2 (1988): 1344-1351. [PubMed]
Thomson, J. and D. Solter. “Transgenic markers for mammalian chimeras." Roux’s Arch. Dev. Biol. 197 (1988): 63-65.
Thomas, W.A., J.A. Thomson, J.L. Magnani, and M.S. Steinberg. “Two distinct adhesion mechanisms in embryonic neural retinal cells: III. Functional specificity.” Dev. Biol. 81 (1981): 379-385. [PubMed]
Commentaries and Book Chapters
2005 - 2007
Ludwig, T. and J.A. Thomson. "Defined Culture Media for Human Embryonic Stem Cells." In Human Embryonic Stem Cells (Human Cell Culture - Volume 6), edited by Masters, J., Palsson, B. and J.A. Thomson. Springer, 2007.
Ludwig T and JA Thomson. "Defined Feeder-Independent Medium for Human Embryonic Stem Cell Culture." In Current Protocols in Stem Cell Biology, edited by M. Pera, John Wiley & Sons, Inc., online September 2007.
Yu, J. and J.A. Thomson. "Embryonic Stem Cells: Derivation and Properties." In Principles of Regenerative Medicine, edited by A. Atala. Elsevier Academic Press, September, 2007.
Chang, H.Y., J.A. Thomson and X. Chen. "Microarray Analysis of Stem Cells and Differentiation," in Essentials of Stem Cell Biology, edited by R. Lanza. Elsevier Academic Press, 2006.
Chang, H., Thomson, J.A. and Chen, X. "Microarray Analysis of Stem Cells and Differentiation." In Stem Cells Volume 2: Adult Stem Cells (a volume of Methods in Enzymology), edited by R. Lanza. Elsevier Academic Press, 2006;420:225-54.
Yu, J. and J.A. Thomson. "Embryonic Stem Cells." In Regenerative Medicine 2006. Department of Health and Human Services. August 2006.
Zwaka, T.P. and J.A. Thomson."Homologous Recombination in Human Embryonic Stem Cells." in Essentials of Stem Cell Biology, edited by R. Lanza. Elsevier Academic Press, 2006.
Chang, H.Y., J.A. Thomson and X. Chen. "Microarray Analysis of Stem Cells and Differentiation." in Essentials of Stem Cell Biology, edited by R. Lanza. Elsevier Academic Press, 2006.
Chang, H., Thomson, J.A. and Chen, X. "Microarray Analysis of Stem Cells and Differentiation." In Stem Cells Volume 2: Adult Stem Cells (a volume of Methods in Enzymology), edited by R. Lanza. Elsevier Academic Press, 2006;420:225-54.
2002 - 2004
Ludwig, T. and J.A. Thomson. “Current progress in human embryonic stem cell research,” in Monitoring Stem Cell Research, A Report of the President's Council on Bioethics, 279-294. 2004.
Carpenter, M.K., C. Xu, C.A. Daigh, J.E. Antosiewicz, and J.A. Thomson. “Protocols for the Isolation and Maintenance of Human Embryonic Stem Cells,” in Human Embryonic Stem Cells, edited by A. Chiu, A and M. Rao. Humana Press, 2003.
2000 - 2001
Ouhibi, N., J.A. Thomson, D.P. Wolf, and M. Zelinski-Wooten. “Assisted reproductive technologies and nuclear transfer in nonhuman primates,” in Assisted Reproductive Technologies, edited by D.P. Wolf and M.B. Zelinski-Wooten, 253-284. Tolowa, NJ: Humana Press, Inc., 2001.
Andrews, P.W., S.A. Przyborski, and J.A. Thomson. “Embryonal Carcinoma Cells as Embryonic Stem Cells,” in Stem Cell Biology, edited by D. Marshak, R. Gardner, and D. Gottlieb, 231-266. Cold Spring Harbor, NY: Cold Spring Harbor Press, 2001.
Thomson, J.A. “Human Embryonic Stem Cells,” in The Human Embryonic Stem Cell Debate, edited by K. Lebacqz, S. Holland, and L. Zoloth, 15-26. Boston: MIT Press, 2001.
1998 - 1999
Thomson, J.A. “Funding of human embryo research in the United States. ” Nature Biotech. 17: 312. 1999. [PubMed]
First, N.L. and J.A. Thomson. “From cows stem therapies?” Nature Biotech. 18: 620-621. 1998. [PubMed]
Thomson, J.A., V.S Marshall, and J.Q. Trojanowski. “Neural differentiation of rhesus embryonic germ cells,” in Neoplastic Transformation of Testicular Germ Cells, edited by E. Rajpert-De Meyts, K.M Grigor, and N.E Skakkebaek., 149-157. Copenhagen: Munksgaard, 1998.